doc. Ing.

Radim Kolář

Ph.D.

FEKT, UBMI – vedoucí ústavu

+420 54114 6668
kolarr@vut.cz

Odeslat VUT zprávu

Publikační výsledky

2025
KOLÁŘ, R.; VIČAR, T.; CHMELÍK, J.; JAKUBÍČEK, R.; ODSTRČILÍK, J.; NOHEL, M.; SKORKOVSKÁ, K.; TORNOW, R. Compact Monocular Video-Ophthalmoscope to Measure Retinal Reflectance Changes to Flicker Light Stimuli. 2025, vol. 18, no. 6, 10 p. ISSN: 1864-0648.
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2024
DATHAN-STUMPF, A.; STEPAN, H.; ORSÁGOVÁ, E.; JAKUBÍČEK, R.; BERBÉE, C.; SEIDENSPINNER, M.; KOLÁŘ, R.; RAUSCHER, F. Pregnancy induces retinal microvascular changes indicating cardio-metabolic stress. Pregnancy Hypertension-An International Journal of Womens Cardiovascular Health, 2024, vol. 35, no. March 2024, p. 30-31. ISSN: 2210-7789.
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ŠÍMA, J.; NĚMCOVÁ, A.; KOLÁŘ, R. ADVANCED PHASE ANALYSIS OF RETINAL VIDEOS USING ECG. Kladno: 2024. 4 p.
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2023
VALTEROVÁ, E.; UNTERLAUFT, J.; FRANCKE, M.; TORALF, K.; KOLÁŘ, R.; RAUSCHER, F. Comprehensive automatic processing and analysis of adaptive optics flood illumination retinal images on healthy subjects. Biomedical Optics Express, 2023, vol. 14, no. 2, p. 945-970. ISSN: 2156-7085.
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ODSTRČILÍK, J.; KOLÁŘ, R.; HORN, F.; TORNOW, R. Comparative analysis of retinal photoplethysmographic spatial maps and thickness of retinal nerve fiber layer. PLoS One, 2023, vol. 18, no. 5, p. 1-15. ISSN: 1932-6203.
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NOHEL, M.; KOLÁŘ, R. Segmentation of optic disc and cup in retinal images using of deep learning approaches. Proceedings I of the 29th Conference STUDENT EEICT 2023. 1st edition. Brno, Czech Republic: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2023. p. 265-269. ISBN: 978-80-214-6153-6.
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TORNOW, R.; ODSTRČILÍK, J.; KOLÁŘ, R. A multi-color video-ophthalmoscopes allows to measure the spectral distribution of light absorption of blood in the human retina. Frontiers in Medicine, 2023, vol. 10, no. 1, p. 1-6. ISSN: 2296-858X.
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KOLÁŘ, R.; VIČAR, T.; CHMELÍK, J.; JAKUBÍČEK, R.; ODSTRČILÍK, J.; VALTEROVÁ, E.; NOHEL, M.; SKORKOVSKÁ, K.; TORNOW, R. Assessment of retinal vein pulsation through video-ophthalmoscopy and simultaneous biosignals acquisition. Biomedical Optics Express, 2023, vol. 14, no. 6, p. 2645-2657. ISSN: 2156-7085.
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VIČAR, T.; JAKUBÍČEK, R.; CHMELÍK, J.; KOLÁŘ, R. Registration of medical image sequences using auto-differentiation. In Medical Imaging and Computer-Aided Diagnosis: Proceedings of 2022 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2022). Lecture notes in Electrical Engineering. 1. Springer, 2023. p. 169-178. ISBN: 978-981-16-6774-9. ISSN: 1876-1100.
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2022
VIČAR, T.; CHMELÍK, J.; NAVRÁTIL, J.; KOLÁŘ, R.; CHMELÍKOVÁ, L.; ČMIEL, V.; JAGOŠ, J.; PROVAZNÍK, I.; MASAŘÍK, M.; GUMULEC, J. Cancer cell viscoelasticity measurement by quantitative phase and flow stress induction. BIOPHYSICAL JOURNAL, 2022, vol. 121, no. 9, p. 1632-1642. ISSN: 0006-3495.
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KOLÁŘ, R.; VIČAR, T.; ODSTRČILÍK, J.; VALTEROVÁ, E.; KRÁLÍK, M.; TORNOW, R. Multispectral retinal video-ophthalmoscope with fiber optic illumination. 2022, vol. 15, no. 9, 12 p. ISSN: 1864-0648.
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LABOUNKOVÁ, I.; LABOUNEK, R.; KOLÁŘ, R.; TORNOW, R.; BABBS, C.; MCCLELLAND, C.; MILLER, B.; NESTRAŠIL, I. Heart rate and age modulate retinal pulsatile patterns. Communications Biology, 2022, vol. 5, no. 1, p. 1-10. ISSN: 2399-3642.
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PAŠTĚKA, R.; SCHÖLLBAUER, L.; SANTOS, P.; KOLÁŘ, R.; FORJAN, M. Experimental Evaluation of Dry Powder Inhalers during Inhalation and Exhalation Using a Model of the Human Respiratory System (xPULM™). Pharmaceutics, 2022, vol. 14, no. 3, p. 1-15. ISSN: 1999-4923.
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NOHEL, M.; KOLÁŘ, R. Detection of optic disc in retinal fundus image. In Proceedings I of the 28th Conference STUDENT EEICT 2022 General Papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022. p. 239-242. ISBN: 978-80-214-6029-4.
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2021
VALTEROVÁ, E.; RAUSCHER, F.G..; KOLÁŘ, R. Robust Automatic Montaging of Adaptive Optics Flood Illumination Retinal Images. In Annual Conference on Medical Image Understanding and Analysis. Lecture Notes in Computer Science. Oxford, Great Britain: Springer, Cham., 2021. p. 503-513. ISBN: 978-3-030-80432-9. ISSN: 0302-9743.
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NĚMCOVÁ, A.; SVOZILOVÁ, V.; BUCSUHÁZY, K.; SMÍŠEK, R.; MÉZL, M.; HESKO, B.; BELÁK, M.; BILÍK, M.; MAXERA, P.; SEITL, M.; DOMINIK, T.; SEMELA, M.; ŠUCHA, M.; KOLÁŘ, R. Multimodal Features for Detection of Driver Stress and Fatigue: Review. 2021, vol. 22, no. 6, p. 3214-3233. ISSN: 1558-0016.
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PAŠTĚKA, R.; SANTOS, P.; BARROS, N.; KOLÁŘ, R.; FORJAN, M. Patient-Ventilator Interaction Testing Using the Electromechanical Lung Simulator xPULM (TM) during V/A-C and PSV Ventilation Mode. Applied Sciences - Basel, 2021, vol. 11, no. 9, p. 1-14. ISSN: 2076-3417.
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VIČAR, T.; GUMULEC, J.; KOLÁŘ, R.; KOPEČNÁ, O.; PAGÁČOVÁ, E.; FALKOVÁ, I.; FALK, M. DeepFoci: Deep Learning-Based Algorithm for Fast Automatic Analysis of DNA Double-Strand Break Ionizing Radiation-Induced Foci. Computational and Structural Biotechnology Journal, 2021, vol. 19, no. 1, p. 1-16. ISSN: 2001-0370.
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LABOUNKOVÁ, I.; LABOUNEK, R.; NESTRAŠIL, I.; ODSTRČILÍK, J.; TORNOW, R.; KOLÁŘ, R. Blind Source Separation of Retinal Pulsatile Patterns in Optic Nerve Head Video-Recordings. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2021, vol. 40, no. 3, p. 852-864. ISSN: 0278-0062.
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KOLÁŘ, R.; ODSTRČILÍK, J.; TORNOW, R. Photoplethysmographic analysis of retinal videodata based on the Fourier domain approach. Biomedical Optics Express, 2021, vol. 12, no. 12, p. 7405-7421. ISSN: 2156-7085.
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VIČAR, T.; CHMELÍK, J.; JAKUBÍČEK, R.; CHMELÍKOVÁ, L.; GUMULEC, J.; BALVAN, J.; PROVAZNÍK, I.; KOLÁŘ, R. Self-supervised pretraining for transferable quantitative phase image cell segmentation. Biomedical Optics Express, 2021, vol. 12, no. 10, p. 6514-6528. ISSN: 2156-7085.
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KOLÁŘ, R.; VIČAR, T.; CHMELÍKOVÁ, L.; PROVAZNÍK, I. Increasing the Image Contrast via Fast Fluorescence Photobleaching. In 2021 43nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). Elsevier, 2021. p. 2741-2744. ISBN: 978-1-7281-1179-7.
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VIČAR, T.; GUMULEC, J.; KOLÁŘ, R.; CHMELÍK, J.; NAVRATIL, J.; CHMELÍKOVÁ, L.; ČMIEL, V.; PROVAZNÍK, I.; MASAŘÍK, M. Parametric Deconvolution for Cancer Cells Viscoelasticity Measurements from Quantitative Phase Images. In IEEE Engineering in Medicine and Biology Society Conference Proceedings. Proceedings IEEE EMBC. 345 E 47TH ST, NEW YORK, NY 10017 USA: IEEE, 2021. p. 439-442. ISBN: 978-1-7281-1179-7. ISSN: 1557-170X.
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2020
REPČÍK, T.; POLÁKOVÁ, V.; WALOSZEK, V.; NOHEL, M.; SMITAL, L.; VÍTEK, M.; KOLÁŘ, R. Biometric Authentication Using the Unique Characteristics of the ECG Signal. In Computing in Cardiology 2020. Computing in Cardiology. Rimini, Italy: IEEE, 2020. no. 1, p. 1-4. ISSN: 2325-887X.
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VIČAR, T.; CHMELÍK, J.; KOLÁŘ, R. Cell Segmentation in Quantitative Phase Images with Improved Iterative Thresholding Method. In EMBEC 2020, IFMBE Proceedings vol. 80. IFMBE Proceedings. Switzerland: Springer Nature Switzerland AG 2021, 2020. p. 233-239. ISBN: 978-3-030-64609-7. ISSN: 1680-0737.
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TORNOW, R.; KOLÁŘ, R.; ODSTRČILÍK, J.; LABOUNKOVÁ, I.; HORN, F. Imaging video plethysmography shows reduced signal amplitude in glaucoma patients in the area of the microvascular tissue of the optic nerve head. GRAEFES ARCHIVE FOR CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 2020, no. 1, p. 1-12. ISSN: 0721-832X.
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2019
LABOUNKOVÁ, I.; LABOUNEK, R.; ODSTRČILÍK, J.; HRACHO, M.; NESTRAŠIL, I.; TORNOW, R.; KOLÁŘ, R. Retinal pulsatile shift enhancement with blind source separation. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE - ARVO 2019. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE. 2019. no. 9, p. 1-3. ISSN: 0146-0404.
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KOLÁŘ, R.; ODSTRČILÍK, J.; LABOUNKOVÁ, I.; HRACHO, M.; TORNOW, R. Eye movement analysis using a binocular video-ophthalmoscope. In Proceedings of IEEE Engineering in Medicine and Biology Conference. Proceedings IEEE EMBC. 2019. p. 4725-4728. ISSN: 1557-170X.
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VIČAR, T.; BALVAN, J.; JAROŠ, J.; JUG, F.; KOLÁŘ, R.; MASAŘÍK, M.; GUMULEC, J. Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison. BMC BIOINFORMATICS, 2019, vol. 20, no. 1, p. 1-25. ISSN: 1471-2105.
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LABOUNKOVÁ, I.; LABOUNEK, R.; ODSTRČILÍK, J.; HRACHO, M.; NESTRAŠIL, I.; TORNOW, R.; KOLÁŘ, R. Blind Source Separation of Different Retinal Pulsatile Patterns from Simultaneous Long-term Binocular Ophthalmoscopic Video-records. In Proceedings of IEEE Engineering in Medicine and Biology Conference. Proceedings IEEE EMBC. 2019. p. 4729-4732. ISSN: 1557-170X.
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VIČAR, T.; KOLÁŘ, R. Univerzální nástroj pro regresi a segmentaci obrazů pomocí hlubokého učení. In Trendy v biomedicínskom inžinierstve 2019. Terchová, Slovensko: Žilinská univerzita, 2019. s. 1-5. ISBN: 978-80-554-1587-1.
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VIČAR, T.; GUMULEC, J.; BALVAN, J.; HRACHO, M.; KOLÁŘ, R. Label-free nuclear staining reconstruction in quantitative phase images using deep learning. In World Congress on Medical Physics and Biomedical Engineering, June 3-8, 2018, Prague, Czech Republic. Springer, Singapore, 2019. p. 239-242. ISBN: 978-981-10-9034-9.
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VALTEROVÁ, E.; TORNOW, R.; KOLÁŘ, R. Estimation of Time Delay Between Artery and Vein Pulsation using Experimental Video-Ophthalmoscope. In Proceedings of IEEE Engineering in Medicine and Biology Conference. Proceedings IEEE EMBC. Berlin, Germany: IEEE, 2019. p. 4721-4724. ISBN: 978-1-5386-1311-5. ISSN: 1557-170X.
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2018
JAKUBÍČEK, R.; CHMELÍK, J.; NECKÁŘ, J.; KOLÁŘ, R. Automatic Segmentation of Myocardial Infarction in Rats Subjected to Regional Ischemia. In Computing in Cardiology 2018. Computing in Cardiology. Maastricht, Netherlands: Computing in Cardiology, 2018. no. 1, p. 1-4. ISSN: 2325-887X.
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KOLÁŘ, R.; TORNOW, R.; HORN, F.; ODSTRČILÍK, J. Development of a binocular video-ophthalmoscope to compare parameters of heart beat induced blood volume changes between both eyes. USA: Association for Research in Vision and Ophthalmology, 2018. p. 5859-5859.
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HESKO, B.; KOLÁŘ, R.; HARABIŠ, V. Optical Disc Segmentation Using Fully Convolutional Neural Network in Retina Images. In Proceedings of IEEE Student Branch Conference Blansko 2018. 2018. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2018. p. 16-20. ISBN: 978-80-214-5661-7.
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HRACHO, M.; KOLÁŘ, R.; LABOUNKOVÁ, I.; ODSTRČILÍK, J.; TORNOW, R. Automatic detection of spontaneous venous pulsations using retinal image sequences. In Proceedings of the IV ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing: VipIMAGE 2017. Taylor and Francis, Publication, 2018. p. 827-833. ISBN: 978-3-319-68194-8.
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TORNOW, R.; ODSTRČILÍK, J.; KOLÁŘ, R. Time-resolved quantitative inter-eye comparison of cardiac cycle-induced blood volume changes in the human retina. Biomedical Optics Express, 2018, vol. 9, no. 12, p. 6237-6254. ISSN: 2156-7085.
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2017
ŠIKNER, T.; KOLÁŘ, R. Impact of gain on high–frequency contrast–enhanced ultrasound video and radio frequency data. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2017, vol. 19, no. 3, p. 73-77. ISSN: 1213-1539.
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KOLÁŘ, R.; LABOUNKOVÁ, I.; ODSTRČILÍK, J.; HRACHO, M.; TORNOW, R. Detection of distorted frames in retinal video-sequences via machine learning. In SPIE Proceedings (Optical Society of America). Novel Biophotonics Techniques and Applications IV. SPIE-OSA, 2017. p. 1-4. ISBN: 9781510612846.
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HESKO, B.; KOLÁŘ, R.; HARABIŠ, V. Vessels model for laser speckle contrast imaging method. In Proceedings of IEEE Student Branch Conference Mikulov 2017. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2017. p. 25-29. ISBN: 978-80-214-5526-9.
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LIBERDOVÁ, I.; KOLÁŘ, R. Simultaneous ECG, finger and retinal photoplethysmography measurement. In Proceedings of The 23rd Conference STUDENT EEICT 2017. 1. Brno: Vysoké učení technické vBrně, Fakulta elektrotechniky a komunikačních technologií, 2017. p. 329-333. ISBN: 978-80-214-5496-5.
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HESKO, B.; KOLÁŘ, R.; HARABIŠ, V. Design of an experimental laser speckle contrast imaging system and image evaluation. Lékař a technika, 2017, vol. 47, no. 3, p. 101-107. ISSN: 0301-5491.
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TORNOW, R.; MILCZAREK, A.; ODSTRCILIK, J.; KOLAR, R. Binocular video ophthalmoscope for simultaneous recording of sequences of the human retina to compare dynamic parameters. In SPIE Proceedings (Optical Society of America). Novel Biophotonics Techniques and Applications IV. Mnichov: 2017. p. 1-6. ISBN: 9781510612846.
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VIČAR, T.; KOLÁŘ, R. Random Forests Pixel-wise Classification for Detection and Segmentation of Cells in the Images from Holographic Microscope. In Proceedings of IEEE Student Branch Conference Mikulov 2017. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2017. p. 67-70. ISBN: 978-80-214-5526-9.
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ŠTOHANZLOVÁ, P.; KOLÁŘ, R. Tissue perfusion modelling in optical coherence tomography. BIOMED ENG ONLINE, 2017, vol. 16, no. 1, p. 1-16. ISSN: 1475-925X.
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2016
LIBERDOVÁ, I.; KOLÁŘ, R.; TORNOW, R. Image Quality Assessment of ophthalmologic videosequences using phase correlation. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2016, vol. 18, no. 5, p. 153-159. ISSN: 1213-1539.
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MÉZL, M.; JIŘÍK, R.; DVOŘÁKOVÁ, L.; DRAŽANOVÁ, E.; KOLÁŘ, R. Comparison of Arterial Input Function Models for Small-Animal Ultrasound Perfusion Imaging. In Proceedings of 2016 IEEE International Ultrasonics Symposium. Tours, Francie: IEEE Ultrasonics, Ferroelectrics, and Frequency Control Society, 2016. p. 1-4. ISBN: 978-1-4673-9897-8.
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LIBERDOVÁ, I.; KOLÁŘ, R. Video Quality Assessment in Experimental Retinal Imaging. Sborník příspěvků studentské konference Blansko. 1. Blansko: Brno University of Technology, 2016. p. 51-54. ISBN: 978-80-214-5389-0.
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KOLÁŘ, R.; TORNOW, R.; ODSTRČILÍK, J.; LIBERDOVÁ, I. Registration of retinal sequences from new video-ophthalmoscopic camera. BIOMED ENG ONLINE, 2016, vol. 15, no. 57, p. 1-17. ISSN: 1475-925X.
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2015
KOLÁŘ, R.; SEMERÁD, L.; DRAHANSKÝ, M.; ODSTRČILÍK, J.; HÁJEK, J.; BOROVSKÝ, J. Bimodal Eye Imaging System for Biometric and Medical Applications. Security and Protection of Information 2015. Brno: University of Defence in Brno, 2015. p. 83-95. ISBN: 978-80-7231-997-8.
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HÁJEK, J.; DRAHANSKÝ, M.; KOLÁŘ, R.; ODSTRČILÍK, J.; BOROVSKÝ, J. Bimodal eye imaging system. In Signal-Image Technology and Internet-Based Systems. Bangkok: Institute of Electrical and Electronics Engineers, 2015. p. 572-575. ISBN: 978-1-4673-9721-6.
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ŠIKNER, T.; KOLÁŘ, R. Registration of Contrast-Enhanced Ultrasound Sequences. In Proceedings of the 21st Conference STUDENT EEICT 2015. 2015. p. 495-499. ISBN: 978-80-214-5148-3.
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ŠTOHANZLOVÁ, P.; KOLÁŘ, R. Flow rate estimation by optical coherence tomography using contrast dilution approach. In Optical Coherence Imaging Techniques and Imaging in Scattering Media. 9541. Munich: SPIE, 2015. p. 954107-1 (954107-6 p.)ISBN: 9781628417067.
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KOLÁŘ, R.; TORNOW, R.; ODSTRČILÍK, J. Video ophthalmoscope measures fast temporal changes in the human retina. SPIE Newsroom, 2015, no. 2015, p. 1-2. ISSN: 1818-2259.
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TORNOW, R.; KOLÁŘ, R.; ODSTRČILÍK, J. Non-mydriatic video ophthalmoscope to measure fast temporal changes of the human retina. In Proceedings of SPIE, Volume 9540. 2015. p. 954006 (954006-6 p.)ISBN: 9781628417050.
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MÉZL, M.; JIŘÍK, R.; SOUČEK, K.; KOLÁŘ, R. Evaluation of Accuracy of Bolus and Burst Method for Quantitative Ultrasound Perfusion Analysis with Various Arterial Input Function Models. In Proceedings on IEEE International Ultrasonics Symposium 2015. 2015. p. 1-4. ISBN: 978-1-4799-8182-3.
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KOLÁŘ, R.; TORNOW, R.; ODSTRČILÍK, J. Retinal Image Registration for Eye Movement Estimation. In Proceedings of IEEE EMBC. Proceedings IEEE EMBC. 2015. p. 5247-5250. ISBN: 978-1-4244-9270-1. ISSN: 1557-170X.
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ŠIKNER, T.; JANOUŠEK, O.; KOLÁŘ, R. Detrended fluctuation analysis of heart rate variability: Comparison of classic and frequency-based parameters. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2015, vol. 6, no. 2, p. 30-36. ISSN: 1213-1539.
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MÉZL, M.; JIŘÍK, R.; HARABIŠ, V.; KOLÁŘ, R.; STANDARA, M.; NYLUND, K.; GILJA, O.; TAXT, T. Absolute ultrasound perfusion parameter quantification of a tissue-mimicking phantom using bolus tracking. IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL, 2015, vol. 62, no. 5, p. 983-987. ISSN: 0885-3010.
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ODSTRČILÍK, J.; KOLÁŘ, R.; TORNOW, R.; BUDAI, A.; JAN, J.; MACKOVÁ, P.; VODÁKOVÁ, M. Analysis of the Retinal Nerve Fiber Layer Texture Related to the Thickness Measured by Optical Coherence Tomography. In Developments in Medical Image Processing and Computational Vision. Lecture Notes in Computational Vision and Biomechanics. Switzerland: Springer International Publishing, 2015. p. 19-40. ISBN: 978-3-319-13406-2.
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DRAHANSKÝ, M.; KOLÁŘ, R.; MŇUK, T. Elektronické zařízení pro snímání obrazu sítnice a duhovky oka. Česká a slovenská oftalmologie, 2015, roč. 71, č. 6, s. 302-308. ISSN: 1211-9059.
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ODSTRČILÍK, J.; KOLÁŘ, R.; HARABIŠ, V.; TORNOW, R. Classification-Based Blood Vessel Segmentation in Retinal Images. In Computational Vision and Medical Image Processing V. London, UK: CRC Press Taylor and Francis Group, 2015. p. 95-100. ISBN: 978-1-138-02926-2.
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ODSTRČILÍK, J.; ČMIEL, V.; KOLÁŘ, R.; RONZHINA, M.; BAIAZITOVA, L.; PEŠL, M.; PŘIBYL, J.; PROVAZNÍK, I. Computer Analysis of Isolated Cardiomyocyte Contraction Process via Advanced Image Processing Techniques. In Computing in Cardiology 2015. 42. Nice, France: Computing in Cardiology, Inc., 2015. p. 453-456. ISBN: 978-1-4799-4347-0.
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2014
ODSTRČILÍK, J.; KOLÁŘ, R.; TORNOW, R.; JAN, J.; BUDAI, A.; MAYER, M.; VODÁKOVÁ, M.; LAEMMER, R.; LAMOŠ, M.; KUNA, Z.; GAZÁREK, J.; KUBĚNA, T.; ČERNOŠEK, P.; RONZHINA, M. Thickness related textural properties of retinal nerve fiber layer in color fundus images. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 2014, vol. 38, no. 6, p. 508-516. ISSN: 0895-6111.
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ŠTOHANZLOVÁ, P.; KOLÁŘ, R. Fantom pro optickou koherentní tomografii - použití pro perfuzní analýzu. In Nové směry v biomedicínském inženýrství. Brno: UBMI, VUT v Brně, 2014. s. 61-70. ISBN: 978-80-214-5049-3.
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KOLÁŘ, R.; PODLIPNÁ, P. Analysis of images from optical coherence tomography for the nanoparticle transport. In Medical Image Understanding and Analysis. London: BMVA, 2014. p. 215-221. ISBN: 1-901725-51-0.
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ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; TORNOW, R.; BUDAI, A. Blood Vessel Segmentation in Video-Sequences From the Human Retina. In 2014 IEEE International Conference on Imaging Systems and Techniques (IST) Proceedings. Santorini, Greece: IEEE, 2014. p. 129-133. ISBN: 978-1-4799-6748-3.
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KOLÁŘ, R.; HOEHER, B.; ODSTRČILÍK, J.; SCHMAUSS, B.; JAN, J. Registration of image sequences from experimental low-cost fundus camera. In Biomedical Image Registration. Lecture Notes in Computer Science. London: Springer International Publishing, 2014. p. 174-183. ISBN: 978-3-319-08553-1.
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ŠIKNER, T.; KOLÁŘ, R. Modifikace detrendované analýzy fluktuace využívající charakteristický tvar DFA křivky. In Nové směry v biomedicínském inženýrství. 2014. s. 55-60. ISBN: 978-80-214-5049-3.
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HÁJEK, J.; DRAHANSKÝ, M.; KOLÁŘ, R. Experimental ophthalmic multimodal imaging system for iris and retina. In Proceedings of IIAI 3rd International Conference on Advanced Applied Informatics. Kitakyushu: IEEE Computer Society, 2014. p. 676-679. ISBN: 978-1-4799-4174-2.
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2013
ODSTRČILÍK, J.; KOLÁŘ, R.; TORNOW, R.; BUDAI, A.; JAN, J.; MACKOVÁ, P.; VODÁKOVÁ, M. Analysis of the retinal nerve fiber layer texture related to the thickness measured by optical coherence tomography. In Computational Vision and Medical Image Processing IV. 4. London: Taylor & Francis Group, 2013. p. 105-110. ISBN: 978-1-138-00081-0.
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KOLÁŘ, R.; HARABIŠ, V.; ODSTRČILÍK, J. Hybrid retinal image registration using phase correlation. IMAGING SCIENCE JOURNAL, 2013, vol. 61, no. 4, p. 269-384. ISSN: 1368-2199.
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SLÁVIK, V.; KOLÁŘ, R.; HARABIŠ, V.; JIŘÍK, R. Application of Nakagami Distributions in Ultrasound Contrast Imaging. In Measurement 2013 Proceedings. Slovakia: VEDA, 2013. p. 117-120. ISBN: 978-80-969672-5-4.
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SLÁVIK, V.; KOLÁŘ, R.; PODLIPNÁ, P. Laboratorní úlohy pro výuku lékařské diagnostické techniky. In Trendy v biomedicínskom inžinierstve 2013 - Zborník konferencie. Košice: Technická univerzita v Košiciach, 2013. s. 27-29. ISBN: 978-80-8086-208-4.
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HARABIŠ, V.; KOLÁŘ, R.; MÉZL, M.; JIŘÍK, R. Comparison and evaluation of indicator dilution models for bolus of ultrasound contrast agents. PHYSIOLOGICAL MEASUREMENT, 2013, vol. 34, no. 2, p. 151-162. ISSN: 0967-3334.
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MACKOVÁ, P.; KOLÁŘ, R.; ODSTRČILÍK, J. Analýza geometrického zkreslení multimodálních obrazových dat sítnice. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2013, roč. 15, č. 5, s. 315-321. ISSN: 1213-1539.
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PODLIPNÁ, P.; KOLÁŘ, R. Single fiber perfusion phantom for optical coherence tomography. In Optical Coherence Tomography and Coherence Techniques VI. PROCEEDINGS OF SPIE. Munich, Germany: 2013. p. 88020Q-1 (88020Q-6 p.)ISBN: 978-0-8194-9651-5.
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KOLÁŘ, R.; ODSTRČILÍK, J.; MACKOVÁ, P.; LAEMMER, R. Registration of the long-term autofluorescence retinal images taken from glaucomatic patients. In Computational Vision and Medical Image Processing. London: Taylor & Francis, 2013. p. 115-119. ISBN: 978-1-138-00081-0.
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JIŘÍK, R.; NYLUND, K.; GILJA, O.; MÉZL, M.; HARABIŠ, V.; KOLÁŘ, R.; STANDARA, M.; TAXT, T. Ultrasound perfusion analysis combining bolus-tracking and burst-replenishment. IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL, 2013, vol. 60, no. 2, p. 310-319. ISSN: 0885-3010.
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SLÁVIK, V.; KOLÁŘ, R.; HARABIŠ, V.; JIŘÍK, R. Rician inverse Gaussian model of scattering in ultrasound contrast media. In 2013 IEEE International Ultrasonics Symposium Proceedings. 2013. p. 318-321. ISBN: 978-1-4673-5684-8.
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JIŘÍK, R.; NYLUND, K.; TAXT, T.; MÉZL, M.; HAUSKEN, T.; HARABIŠ, V.; KOLÁŘ, R.; STANDARA, M.; GILJA, O. Parametric Ultrasound Perfusion Analysis Parametric Ultrasound Perfusion Analysis Combining Bolus Tracking and Replenishment. In 2012 IEEE International Ultrasonics Symposium Proceedings. 2013. p. 1323-1326. ISBN: 978-1-4577-1253-1.
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ODSTRČILÍK, J.; KOLÁŘ, R.; BUDAI, A.; HORNEGGER, J.; JAN, J.; GAZÁREK, J.; KUBĚNA, T.; ČERNOŠEK, P.; SVOBODA, O.; ANGELOPOULOU, E. Retinal Vessel Segmentation by Improved Matched Filtering: Evaluation on a New High–Resolution Fundus Image Database. IET Image Processing, 2013, vol. 7, no. 4, p. 373-383. ISSN: 1751-9659.
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KOLÁŘ, R.; TORNOW, R.; LAEMMER, R.; ODSTRČILÍK, J.; GAZÁREK, J.; JAN, J.; KUBĚNA, T.; ČERNOŠEK, P.; MAYER, M. Analysis of Visual Appearance of Retinal Nerve Fibers in High Resolution Fundus Images: A Study on Normal Subjects. Computational and Mathematical Methods in Medicine (Print), 2013, vol. 2013, no. 12, p. 1-10. ISSN: 1748-670X.
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ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; MACKOVÁ, P. Analýza obrazových dat sítnice pro podporu diagnostiky glaukomu. In Nové směry v biomedicínském inženýrství. 2013. Brno, ČR: Společnost elektrotechnického inženýrství, 2013. s. 81-92. ISBN: 978-80-214-4814-8.
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2012
HARABIŠ, V.; KOLÁŘ, R.; MÉZL, M. Influence of injection speed of contrast agent on perfusion analysis using fast bolus method. In Proceedings of the IEEE International Ultrasonics Symposium 2012, Dresden. 2012. p. 1319-1322. ISBN: 978-1-4577-1253-1.
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JAN, J.; ODSTRČILÍK, J.; GAZÁREK, J.; KOLÁŘ, R. Retinal Image Analysis Aimed at Blood Vessel Tree Segmentation and Early Detection of Neural-Layer Deterioration. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 2012, vol. 2012, no. 6, p. 431-441. ISSN: 0895-6111.
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ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; GAZÁREK, J.; KUNA, Z.; VODÁKOVÁ, M. Analysis of retinal nerve fiber layer via Markov random fields in color fundus images. In Proceedings of 19th International Conference on Systems, Signals and Image Processing (IEEE - IWSSIP 2012). Vídeň, Rakousko: TU Wien, 2012. p. 504-507. ISBN: 978-1-4577-2191-5.
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PODLIPNÁ, P.; KOLÁŘ, R. Concentration influence on contrast agents properties in optical coherence tomography. In Student EEICT Proceedings of the 18th conference, Volume 3. 2012. p. 350-354. ISBN: 978-80-214-4462-1.
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KOLÁŘ, R.; JIŘÍK, R.; HARABIŠ, V. Nakagami model of scattering in ultrasound contrast media. In Proceedings of the IEEE International Ultrasonics Symposium 2012, Dresden. 2012. s. 410-412. ISBN: 978-1-4577-1253-1.
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2011
BUDAI, A.; ODSTRČILÍK, J.; KOLÁŘ, R.; HORNEGGER, J.; JAN, J.; KUBĚNA, T.; MICHELSON, G. A Public Database for the Evaluation of Fundus Image Segmentation Algorithms. Proc. of the Association for Research in Vision and Ophthalmology conference (ARVO) 2011. ARVO 2011. Fort Lauderdale, Florida, USA: Association for Research in Vision and Ophthalmology, Inc., 2011. p. 1-2.
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JAN, J.; KOLÁŘ, R.; KUBEČKA, L.; ODSTRČILÍK, J.; GAZÁREK, J. Ophthalmological Image Processing and Analysis in DAR - a survey. Abstracts of Contributions to 7th Intern. Workshop on Data - Algorithms - Decision making. 1. Praha: UTIA AVČR, 2011. p. 25-25.
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ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; BUDAI, A. Gold Standard Database to Support Evaluation of Fundus Image Segmentation Methods. Abstracts of Contributions to 7th International Workshop on Data-Algorithms-Decision Making. UTIA. Praha, ČR: UTIA AV ČR, 2011. p. 46-46.
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JAN, J.; KOLÁŘ, R.; KUBEČKA, L.; ODSTRČILÍK, J.; GAZÁREK, J. FUSION BASED ANALYSIS OF OPHTHALMOLOGIC IMAGE DATA. Kybernetika, 2011, vol. 47 (2011), no. 3, p. 455-481. ISSN: 0023-5954.
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KOLÁŘ, R.; ODSTRČILÍK, J.; HARABIŠ, V.; JAN, J. Illumination Correction and Contrast Equalization in Colour Fundus Images. In 19th European Signal Processing Conference (EUSIPCO-2011). 18th European Signal Processing Conference (EUSIPCO-2010). EURASIP. Barcelona: EURASIP, 2011. no. 1, p. 298-302. ISSN: 2076-1465.
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KUNA, Z.; KOLÁŘ, R. Modelování axiálního a laterálního rozlišení u OCT. In Trendy v biomedicínského inženýrství 2011. sborník konference Trendy v Biomedicínském inženýrství 2011. VŠB - Technická univerzita Ostrava, 2011. s. 32-35. ISBN: 978-80-248-2475-8.
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MÉZL, M.; JIŘÍK, R.; BARTOŠ, M.; HARABIŠ, V.; KRATOCHVÍLA, J.; KOLÁŘ, R. Software Package for Dynamic Contrast-Enhanced Ultrasound Imaging. In Abstract Book - 2011 Joint National Ph.D. Conference in Medical Imaging and MedViz Conference. Bergen, Norway: University of Bergen, 2011. p. 120-121. ISBN: 978-82-993786-6-6.
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KUNA, Z.; KOLÁŘ, R. Experimentální určení axiálního rozlišení u systému optické koherenční tomografie. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2011, roč. 2011, č. 12, s. 1-4. ISSN: 1213-1539.
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HARABIŠ, V.; KOLÁŘ, R.; JIŘÍK, R. Registration of Ultrasound Image Sequences for Perfusion Analysis. In 19th European Signal Processing Conference (EUSIPCO-2011). 18th European Signal Processing Conference (EUSIPCO-2010). EURASIP. Barcelona: EURASIP, 2011. no. 1, p. 1015-1019. ISBN: 978-3-642-03882-2. ISSN: 2076-1465.
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2010
KOLÁŘ, R.; ŠIKULA, V.; BAŠE, M. Retinal Image Registration using Local Phase Correlation. In Proceedings of Biosignal 2010: Analysis of Biomedical Signals and Images. 2010. p. 244-252. ISBN: 978-80-214-4106-4.
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ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; GAZÁREK, J. Retinal nerve fiber layer texture analysis via markov random fields. Abstracts of Contributions to 6th International Workshop on Data-Algorithms-Decision Making. UTIA. Praha, ČR: UTIA AV ČR, 2010. p. 49-49.
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KOLÁŘ, R.; JIŘÍK, R.; HARABIŠ, V.; MÉZL, M.; BARTOŠ, M. Advanced Methods for Perfusion Analysis in Echocardiography. 2010, vol. 59, no. S1, p. S33 (S41 p.)ISSN: 1802-9973.
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ODSTRČILÍK, J.; KOLÁŘ, R.; HARABIŠ, V.; GAZÁREK, J.; JAN, J. Retinal Nerve Fiber Layer Analysis via Markov Random Fields Texture Modelling. In 18th European Signal Processing Conference (EUSIPCO-2010). 18th European Signal Processing Conference (EUSIPCO-2010). EURASIP. EURASIP, 2010. p. 1650-1654. ISSN: 2076-1465.
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KOLÁŘ, R.; JIŘÍK, R.; HARABIŠ, V.; MÉZL, M.; BARTOŠ, M. Advanced Methods for Perfusion Analysis in Echocardiography. PHYSIOLOGICAL RESEARCH, 2010, vol. 59, no. Suppl 1, p. S33 (S41 p.)ISSN: 0862-8408.
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MÉZL, M.; JIŘÍK, R.; HARABIŠ, V.; KOLÁŘ, R. Quantitative Ultrasound Perfusion Analysis In Vitro. In Proceedings of Biosignal 2010: Analysis of Biomedical Signals and Images. Analysis of Biomedical Signals and Images. Brno University of Technology, 2010. p. 279-283. ISBN: 978-80-214-4106-4. ISSN: 1211-412X.
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HARABIŠ, V.; KOLÁŘ, R.; JIŘÍK, R.; MÉZL, M. Perfusion Curves Modelling For Evaluating Of Ultrasound Image Registration. In Proceedings of Biosignal 2010: Analysis of Biomedical Signals and Images. Analysis of Biomedical Signals and Images. Brno University of Technology, 2010. p. 333-340. ISBN: 978-80-214-4106-4. ISSN: 1211-412X.
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NOVOTNÝ, A.; ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J. Texture Analysis Of Nerve Fibre Layer In Retinal Images Via Local Binary Patterns And Gaussian Markov Random Fields. In 20th Biennial International EURASIP Conference BIOSIGNAL 2010. Analysis of Biomedical Signals and Images. EURASIP. Brno: EURASIP, 2010. no. 1, p. 308-315. ISBN: 978-80-214-4106-4. ISSN: 1211-412X.
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KOLÁŘ, R.; TAŠEVSKÝ, P. Registration of 3D Retinal Optical Coherence Tomography Data and 2D Fundus Images. In Biomedical Image registration. Lecture Notes in Computer Science. 2010. no. 6204, p. 72-82. ISSN: 0302-9743.
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KOLÁŘ, R.; HARABIŠ, V.; JIŘÍK, R. Registration of Ultrasound Contrast Images for Perfusion Analysis. In Proceedings of International Ultrasonics Symposium 2009. 2010. s. 1251-1254. ISBN: 978-1-4244-4390-1.
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GAZÁREK, J.; JAN, J.; KOLÁŘ, R.; ODSTRČILÍK, J. Bimodal Comparison of Retinal Nerve Fibre Layer Thickness: Fundus Camera versus Optical Coherence Tomography. Abstracts of Contributions to 6th International Workshop on Data-Algorithms-Decision Making. UTIA. Praha, ČR: UTIA AV ČR, 2010. p. 50-50.
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KUBEČKA, L.; JAN, J.; KOLÁŘ, R. Retrospective Illumination Correction of Retinal Images. International Journal of Biomedical Imaging, 2010, vol. 2010, no. 5, p. 201-223. ISSN: 1687-4188.
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2009
KOLÁŘ, R.; HARABIŠ, V. Automatic Rigid Registration and Analysis of Colour Fundus Image in Patients with Diabetic Retinopathy. World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. Springer, 2009. p. 251-254. ISBN: 978-3-642-03881-5.
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TAŠEVSKÝ, P.; KOLÁŘ, R. Segmentace cévního řečiště ve fotografiích sítnice s využitím 2D diskrétní vlnkové transformace. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2009, roč. 2009, č. 48, s. 1-4. ISSN: 1213-1539.
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KOLÁŘ, R.; VÁCHA, P. Texture Analysis of the Retinal Nerve Fiber Layer in Fundus Images via Markov Random Fields. World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. Springer, 2009. p. 247-250. ISBN: 978-3-642-03881-5.
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GAZÁREK, J.; JAN, J.; KOLÁŘ, R. Improvement of Textural Analysis Mathod Aimed to Detection of Neural Fibre Layer Loss in Retinal Images. Abstracts of Contributions to 5th International Workshop on Data - Algorithms - Decision Making. Ústav teorie informace AV ČR, v.v.i. UTIA AV ČR, 2009. p. 41-41.
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KOLÁŘ, R.; ČERNOŠEK, P.; JAN, J.; KUBĚNA, T. Statistická analýza vrstvy nervových vláken v barevných digitálních snímcích sítnice. Česká a slovenská oftalmologie, 2009, roč. 65, č. 2, s. 53-58. ISSN: 1803-6597.
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ODSTRČILÍK, J.; JAN, J.; KOLÁŘ, R. Vessel Segmentation by Matched Filtering in Colour Retinal Images. Abstracts of Contributions to 5th International Workshop on Data - Algorithms - Decision Making. Ústav teorie informace AV ČR, v.v.i. 2009. p. 48-48.
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ODSTRČILÍK, J.; JAN, J.; KOLÁŘ, R.; GAZÁREK, J. Improvement of Vessel Segmentation by Matched Filtering in Colour Retinal Images. In IFMBE Proceedings of World Congress on Medical Physics and Biomedical Engineering. Springer. Springer, 2009. p. 327-330. ISBN: 978-3-642-03897-6.
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KOLÁŘ, R.; JAN, J.; LAEMMER, R.; MARDIN, C. The segmentation of zones with increased autofluorescence in the junctional zone of parapapillary atrophy. PHYSIOLOGICAL MEASUREMENT, 2009, roč. 2009, č. 30, s. 505-516. ISSN: 0967-3334.
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2008
KOLÁŘ, R.; JAN, J.; URBÁNEK, D. Texture Based Discrimination of Normal and Glaucomatous Retina. Analysis of Biomedical Signals and Images, 2008, roč. 19, č. 1, s. 1-5. ISSN: 1211-412X.
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KOLÁŘ, R.; JAN, J.; KUBEČKA, L. Registration and Fusion of the Autofluorescent and Infrared Retinal Images. International Journal of Biomedical Imaging, 2008, vol. 2008, no. 513478, p. 1-11. ISSN: 1687-4188.
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MALÍNSKÝ, M.; KOLÁŘ, R.; JAN, J. Localization of the Optic Nerve Head in Colour Fundus Images. Analysis of Biomedical Signals and Images, 2008, roč. 19, č. 1, s. 1-7. ISSN: 1211-412X.
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HARABIŠ, V.; KOLÁŘ, R. Automatic Landmark Detection for Retinal Image Registration. Analysis of Biomedical Signals and Images, 2008, vol. 19, no. 1, p. 1-8. ISSN: 1211-412X.
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LAEMMER, R.; KOLÁŘ, R.; JAN, J.; MARDIN, C. Impact Of Parapapillary Autofluorescence In Glaucoma: Clinical Aspects. Analysis of Biomedical Signals and Images, 2008, roč. 19, č. 1, s. 1-4. ISSN: 1211-412X.
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KOLÁŘ, R. Detekce výpadku vrstvy nervových vláken v barevných fundus snímcích. Sborník abstrakt, Kongres České glaukomové společnosti. 2008. s. 58-58. ISBN: 978-80-254-1568-9.
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GAZÁREK, J.; JAN, J.; KOLÁŘ, R. DETECTION OF NEURAL FIBRE LAYER IN RETINAL IMAGES VIA TEXTURAL ANALYSIS. Analysis of Biomedical Signals and Images, 2008, vol. 2008(19), no. 1, p. 181-187. ISSN: 1211-412X.
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KOLÁŘ, R. Detekce výpadku vrstvy nervových vláken v barevných fundus snímcích. Sborník abstrakt - Kongres České glaukomové společnosti. 2008. s. 58-58. ISBN: 978-80-254-1568-9.
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BARTOŠ, M.; JIŘÍK, R.; HARABIŠ, V.; KOLÁŘ, R. Measurement of SonoVue TM Properties for Quantitative Contrast Ultrasonic Imaging. Analysis of Biomedical Signals and Images, 2008, vol. 19, no. 1, p. 22-22. ISSN: 1211-412X.
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KOLÁŘ, R.; JAN, J. Detection of Glaucomatous Eye via Color Fundus Images Using Fractal Dimensions. Radioengineering, 2008, roč. 17, č. 3, s. 109-114. ISSN: 1210-2512.
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ODSTRČILÍK, J.; JAN, J.; KOLÁŘ, R. Segmentation of Vessel Structure in Retinal Images by Matched Filtering. Analysis of Biomedical Signals and Images, 2008, vol. 2008(19), no. 1, p. 178-183. ISSN: 1211-412X.
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2007
KOLÁŘ, R.; JAN, J. Analýza barevných snímků, HRT obrazů a autofluorescenčních obrazů pro podporu diagnostiky glaukomu. In Sborník abstrakt - XV. sjezd České oftalmologické společnosti. Brno: ČOS, 2007. s. 173-173. ISBN: 978-80-87086-01-8.
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JIŘÍK, R.; JAN, J.; PETERLÍK, I.; HEMZAL, D.; FILIPÍK, A.; ZAČAL, J.; ROLEČEK, J.; KOLÁŘ, R. Ultrasound Transmission Tomography. In Sborník 7. česko-slovenské konference Trendy v biomedicínském inženýrství. Kladno, Česká republika: ČVUT, FBMI, 2007. p. 208-211. ISBN: 978-80-01-03777-5.
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KOLÁŘ, R.; JAN, J. Vývoj nových metod pro včasnou diagnostiku glaukomu. In Trendy v biomedicínském inženýrství. Kladno: ČVUT v Praze, 2007. s. 212-215. ISBN: 978-80-01-03777-5.
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KOLÁŘ, R.; JAN, J. Texture Analysis of Retinal Nerve Fiber Layer in Color Fundus Images. In Abstracts of Contributions to 3rd International Workshop DAR. Praha: ÚTIA AV ČR, 2007. p. 50-50.
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KOLÁŘ, R.; JAN, J. Registration framework for the autofluorescence and infrared images. In Abstracts of Contributions to 3rd International Workshop DAR. Praha: ÚTIA AV ČR, 2007. p. 18-18.
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KOLÁŘ, R.; JAN, J.; JIŘÍK, R. Semiautomatic Detection and Evaluation of Autofluorescent Areas in Retinal Images. In Sborník konference 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 2007. s. 3327-3330.
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2006
VALLA, M.; KOLÁŘ, R. Fraktály v obrezech. In Proceedings of the 12th Conference STUDENT EEICT 2006. Brno: VUT v Brně, 2006. s. 95-97. ISBN: 80-214-3160-1.
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Kolář R, Kubečka L, Jan J, Jiřík R. Image Improvement in Confocal Scanning Laser Ophthalmoscopy. In Analysis of Biomedical Signals and Images. Brno: VUTIUM Press, 2006. 3 p. ISBN: 80-214-3152-0.
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Zacal J, Hemzal D, Jan J, Filipik A, Jirik R, Kolar R. Comparison of Wave-Equation Versus Measurement-Processing Transducer Calibration for Ultrasonic Transmission Tomography. In Proceedings of 28th Annual International Conference IEEE EMBS. New York (USA): 2006. 4 p. ISBN: 14244-0033-3.
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ZAČAL, J., HEMZAL, D., JAN, J., FILIPÍK, A., JIŘÍK, R., KOLÁŘ, R. Comparison of Wave-Equation Based Versus Measurement-Processing Based Transducer Calibration for Ultrasonic Transmission Tomography. In Abstracts of Contributions to 2nd International Workshop on Data – Algorithms – Decision Making. ÚTIA 2006/32. Praha: ÚTIA AV ČR, 2006. 1 p.
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Igor Peterlík, Radovan Jiřík, Nicole Ruiter, Rainer Stotzka, Jiří Jan Radim Kolář. Algebraic Reconstruction Technique for Ultrasound Transmission Tomography. In Proceedings of International Conference ITAB 2006. Ioannina, Řecko: The University of Ioannina, 2006. 6 p.
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Kolář R, Kubečka L, Flusser J, Jan J, Jiřík R. Noise Suppression In Retinal Autofluorescence Images. In Analysis of Biomedical Signals and Images. Brno: VUTIUM Press, 2006. 3 p. ISBN: 80-214-3152-0.
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Kubecka L., Jan J., Kolar R., Jirik R. IMPROVING QUALITY OF AUTOFLUORESCENCE IMAGES USING NON-RIGID IMAGE REGISTRATION. In Proc. 14th European Signal Processing Conf. EUSIPCO 2006. 1. Florence (Italy): Univ. of Pisa, 2006. 5 p.
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Kubecka L, Kolar R, Jan J, Jirik R. Retrospective Illumination Correction of Retinal Images. In Proceedings of 17th International EURASIP Conference BIOSIGNAL 2004. Brno: 2006. 259 p.
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Zacal J., Jan J., Kolar R. Image Data Registration as a Means to 3D Ultrasonic Data Positioning. In Analysis of Biomedical Signals and Images - Proceedings of 18th Biennial International EURASIP Conference BIOSIGNAL 2006. 18th EURASIP intern. biennial conference BIOSIGNAL 2006. Brno: VUTIUM PRESS, 2006. 3 p. ISBN: 80-214-3152-0.
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PETERLÍK, I.; JIŘÍK, R.; RUITER, N.; STOTZKA, R.; JAN, J.; KOLÁŘ, R. Ultrasound Transmission Tomography Using Algebraic Reconstruction Techniques. In Abstracts of Contributions to 2nd International Workshop on Data - Algorithms - Decision Making. Praha: UTIA, AV ČR, 2006. 1 p.
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KOLÁŘ R., JAN J., KUBEČKA L. Computer support for early glaucoma diagnosis based on the fused retinal images. Scripta medica, 2006, vol. 2006, no. 79, p. 249-259. ISSN: 1211-3395.
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KUBEČKA, L.; JAN, J.; KOLÁŘ, R.; JIŘÍK, R. Elastic Registration for Auto-fluorescence Image Averaging. In Proc. 28th IEEE/EMBS Ann.Intern. Conf. 2006. New York: IEEE, 2006. 4 p. ISBN: 1-4244-0033-3.
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JIŘÍK, R.; PETERLÍK, I.; ZAČAL, J.; JAN, J.; RUITER, N.; STOTZKA, R.; KOLÁŘ, R.; KUBEČKA, L. Attenuation Imaging in Ultrasound Transmission Tomography. In Proceedings of 18th Int. EURASIP Conf. BIOSIGNAL 2006. Brno, Česká republika: VUTIUM Press, 2006. 3 p. ISBN: 80-214-3152-0.
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KOLÁŘ, R., JAN, J., KUBĚNA, T., ČERNOŠEK, P., JIŘÍK, R., ZAČAL, J., FILIPÍK, A., PETERLÍK, I. Properties of the Retinal Nerve Fiber Layer via Color Fundus Images. In Abstracts of Contributions to 2nd International Workshop on Data - Algorithms - Decision Making. Česká Republika: DAR ÚTIA Praha, 2006. no. 36, 1 p.
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R. Jiřík, I. Peterlík, J. Jan, J. Začal, R. Kolář, N. Ruiter, R. Stotzka. Reconstruction of Attenuation Images in Ultrasound Transmission Tomography. In Abstracts of Contributions to 2nd International Workshop on Data - Algorithms - Decision Making. Třešť, Česká Republika: DAR ÚTIA Praha, 2006. 1 p.
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J.Jan, R.Kolar,R.Jirik, A.Filipik,L.Kubečka,I.Peterlik,J.Zacal. Overview of Biomedical Image Processing Activities of Brno Group of the DAR. In Abstracts of 2nd Int. Workshop on Data-Algorithms-Decision making. Praha: UTIA AVČR Praha, 2006. 1 p.
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Kolář R, Jiřík R, Začal J, Jonáková M, Jan J. 3D Ultrasound Point Spread Function Measurement and Evaluation. In Analysis of Biomedical Signals and Images. Brno: VUTIUM Press, 2006. 3 p. ISBN: 80-214-3152-0.
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KOLÁŘ, R., JAN, J., LAEMMER, R., MARDIN, CH.Y., JIŘÍK, R., ZAČAL, J., FILIPÍK, A., PETERLÍK, I. Analysis of Retinal Autofluorescence Images for Early Glaucoma Diagnosis. In Abstracts of Contributions to 2nd International Workshop on Data - Algorithms - Decision Making. Česká Republika: DAR ÚTIA Praha, 2006. no. 32, 1 p.
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2005
Začal J, Jan J, Jiřík J, Kolář J, Kubečka L, Peterlík I. Deploying a Campus Grid: Experience With The Condor Distributed Batch System. In International Workshop on Data - Algorithms - Decision Making. Praha: UTIA - Academy of Science of Czech Republic, 2005. 1 p.
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Kolář, R. Jan, J. Chrástek, R. Laemmer, R. Mardin, Ch.Y. AUTOFLUORESCENCE AREAS DETECTION IN HRA IMAGES. In IFMBE Proceedings. Praha: IFMBE, 2005. p. 2384-2388.
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Jan, J., Jiřík, R., Kolář, R., Filipík, A., Kubečka, L. Selected Problems of Medical Image Data Processing (vyžádaný referát). In 2. společná konference. Praha: UTIA AVČR Praha, 2005. 1 p.
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Kolář Radim, Jiří Jan. Tissue Models and Speckle Reduction in Medical Ultrasound Images. In Image Analysis. Lecture Notes in Computer Science. Springer. Lecture Notes in Computer Science, 2005. no. 3540, p. 1017-1026. ISBN: 3-540-26320-9. ISSN: 0302-9743.
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Kubecka L., Jan J., Kolar R., Jirik R. Non-Rigid Registration of Time Series of Auto-Fluorescent HRA 2D Images. In Abstracts of Contributions to International Workshop on Data - Algorithms - Decision Making. 41. Praha: UTIA, Czech Academy of Sciencies, 2005. no. 41, 1 p.
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Kolář, R. Jan, J. Chaloupka, V. ULTRASOUND TISSUE CHARACTERIZATION USING NAKAGAMI MODEL WITH TEMPORAL AVERAGING. In IFMBE Proceedings - EMBEC 2005. IFMBE. Praha: IFMBE, 2005. p. 616-620.
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Kolář, R. Kubečka, L. Jan, J. Barevná stereoskopie očního pozadí za využití digitální fotografie a konfokálního laserového oftalmoskopu. In DIGITÁLNÍ ZOBRAZOVÁNÍ V BIOLOGII A MEDICÍNĚ 2005, elektronický sborník. České Budějovice: 2005. 2 s.
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Radovan Jiřík, Igor Peterlík, Jiří Jan, Nicole Ruiter, Rainer Stotzka, Radim Kolář, Libor Kubečka, Jiří Začal. Model of Radiofrequency Data Acquisition in Ultrasound Transmission Tomography. In Abstracts of Contributions to International Workshop on Data - Algorithms - Decision Making. Praha: DAR UTIA AV ČR, 2005. 1 p.
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KOLÁŘ, R.,KUBEČKA, L., JAN, J. CHRÁSTEK, R. DISPARITY ESTIMATION IN UNCALIBRATED STEREO RETINAL IMAGES. In IFMBE Proceedings. Praha: IFMBE, 2005. p. 555-559.
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2004
KOLÁŘ, R., KUBEČKA, L. Processing and Visualization of Retina Laser Images. In IWSSIP´04 ambient multimedia. Poznaň, Polsko: Polish Society for Theoretical and Applied Electrical Engineering, 2004. 4 p. ISBN: 83-906074-8-4.
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KOLÁŘ, R., JIŘÍK, R., JAN, J. Estimator Comparison of the Nakagami-m Parameter and its Application in Echocardiography. Radioengineering, 2004, vol. 13, no. 1, p. 8-12. ISSN: 1210-2512.
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KOLÁŘ, R., JIŘÍK, R. Nakagami-m Distribution In Echocardiography. In Analysis of Biomedical Signals and Images. Brno: Brno University of Technology, 2004. no. 17, 3 p. ISBN: 80-214-2633-0.
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KOLÁŘ, R. Surface reconstruction from retinal laser images. In Proceedings of the 26th Annual International Conference of the IEEE EMBS. San Francisco: Engeneering in Medicine and Biology Society, 2004. 4 p. ISBN: 0-7803-8439-3.
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2003
KOLÁŘ, R., JAN, J. 3D imaging of retina laser images with Visualization Toolkit. In Proceedings of Radioelektronika 2003. VUTIUM BRNO. Brno: Brno University of Technology, 2003. 4 p. ISBN: 80-214-2383-8.
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KOLÁŘ, R., JAN, J. VISUALIZATION OF THE RETINA LASER IMAGES IN MATLAB. In Proceedings of Matlab 2003. Praha: Humusoft s.r.o., 2003. 6 s. ISBN: 80-7080-526-9.
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Kolář R., Kurečka R., Rohel J., Jan J., Chaloupka V. 3D Freehand Ultrasound Measurement System. In 3D Freehand Ultrasound Measurement System. Craiova,Rumunsko: The University of Medicine and Pharmacy of Craiova, 2003. 4 p.
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KOLÁŘ, R., FEDRA, P., ROHEL, J., KUREČKA, R., JAN, J., CHALOUPKA, V. 3D interpolation for ultrasound volume reconstruction. In Proceedings of Radioelektronika 2003. Brno: Brno University of Technology, 2003. 4 p. ISBN: 80-214-2383-8.
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KOLÁŘ, R., KOZUMPLÍK, J. Wavelet Packet Transform in Raw Ultrasound Signal Processing. Journal of Electrical Engineering-Elektrotechnicky Casopis, 2003, vol. 54, no. 1-2, 5 p. ISSN: 1335-3632.
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2002
KOLÁŘ, R., KOZUMPLÍK, J. Speckle suppression and contrast enhancement in ultrasound images. In Analysis of biomedical signals and images. Brno: VUTIUM Press, 2002. 3 p. ISBN: 80-214-2120-7.
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KOLÁŘ, R., KOZUMPLÍK, J. Komplexní vlnková transformace a filtrace obrazů. In Matlab 2002. Humusoft s.r.o. Praha: Humusoft, s.r.o., 2002. 9 s. ISBN: 80-7080-500-5.
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KOLÁŘ, R., KOZUMPLÍK, J. Noise suppression in ultrasound images in packet wavelet transform. In Radioelektronika 2002. Bratislava: 2002. 4 p. ISBN: 80-227-1700-2.
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KOZUMPLÍK, J., KOLÁŘ, R. Wavelet Denoising of Electrocardiograms. In Analysis of Biomedical Signals and Images. Brno: Vutium Press, 2002. 3 p. ISBN: 80-214-2120-7.
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ZADRAŽIL, M., KOZUMPLÍK, J., KOLÁŘ, R. Denoising of ECG Signal with Real and Complex Wavelets. In Elektrotechnika a informatika 2002. Zapadočeská univerzita v Plzni: Zapadočeská univerzita v Plzni, 2002. 4 p. ISBN: 80-7082-904-4.
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2001
KOLÁŘ, R., KOZUMPLÍK, J. ELIMINACE ŠUMU V ULTRAZVUKOVÝCH OBRAZECH. In Medifórum - Kongres Mefa 2001. Brno: BVV Veletrhy Brno, 2001. 1 s.
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KOLÁŘ, R., KOZUMPLÍK, J. Fuzzy approach in ultrasound image segmentation. In Computational Intelligence, Theory and Applications. Lecture Notes in Computer Science 2206. Springer-Verlag Berlin Heidelberg: Springer-Verlag Berlin Heidelberg, 2001. 929 p. ISBN: 3-540-42732-5.
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KOLÁŘ, R., KOLKA, M., KOZUMPLÍK, J., PROVAZNÍK, I. Wavelet Based Enhancement of Ultrasonic Signals for Edge Detection. In Proceedings of the 11-th International Conference Radioelektronika 2001. Brno: VUT BRNO, 2001. 4 p. ISBN: 80-214-1861-3.
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KOLÁŘ, R., KOZUMPLÍK, J. FILTRACE SIGNÁLŮ POMOCÍ KOMPLEXNÍ VLNKOVÉ TRANSFORMACE. In Matlab 2001. Praha: Humusoft, 2001. 5 s. ISBN: 80-7080-446-7.
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KOLÁŘ, R., KOZUMPLÍK, J. Adaptive noise suppression in ultrasound images via wavelet transform. In Proceedings of 7th Conference STUDENT FEI 2001. 2. Brno: Vysoké učení technické v Brně, FEI, 2001. 5 p. ISBN: 80-214-1861-5.
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HRUBÝ, R., HOLČÍK, J., KOZUMPLÍK, J., KOLÁŘ, R. Wavelet Based Filtering of Myopotentials in Equine ECG. In SYMBIOSIS 2001. Proc. VI. Intern. Conference. Szczyrk, Poland: Szczyrk, Poland, 2001. 5 p. ISBN: 121-829X.
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KOLÁŘ, R., KOZUMPLÍK, J. Denoising with real and complex wavelets. In DSP-MCOM 2001. Košice, Slovenská republika: Mercury Smékal Publishing House, 2001. 4 p. ISBN: 80-89061-49-4.
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KOLÁŘ, R., KOZUMPLÍK, J. Noise suppression in ultrasound images using wavelets. In Applied Electronics 2001. Plzeň: Západočeská universita, 2001. 4 p. ISBN: 80-7082-758-0.
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2000
KOLÁŘ, R., KOZUMPLÍK, J. Contrast enhancement of ultrasound images via wavelet transform. In Sborník prací studentů a doktorandů FEI VUT. Brno: FEI VUT Brno, 2000. 3 p. ISBN: 80-7204-155-X.
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KOLÁŘ, R., KOZUMPLÍK, J. Optimální prahování ultrazvukových dat s využitím fuzzy entropie. In Matlab 2000. Praha: VŠCHT Praha, 2000. 6 s. ISBN: 80-7080-401-7.
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KOLÁŘ, R., KOZUMPLÍK, J. Wavelet based Wiener denoising with edge enhancement of radiofrequency signal. In Radioelektronika 2000. Brno: Vydavateľstvo STU Bratislava, 2000. 2 p. ISBN: 80-227-1389-9.
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KOLÁŘ, R., KOZUMPLÍK, J. Methods for ultrasound attenuation estimation in tissues. In Analysis of biomedical signals and images. Brno: VUTIUM PRESS, 2000. 3 p. ISBN: 80-214-1610-6.
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KOLÁŘ, R., KOZUMPLÍK, J. Wavelet based Wiener denoising with edge enhancement of radiofrequency signal. In Analysis of biomedical signals and images. Brno: VUTIUM PRESS, 2000. 3 p. ISBN: 80-214-1610-6.
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KOLÁŘ, R., KOZUMPLÍK, J. Předzpracování ultrazvukových dat pomocí fuzzy entropie. Sborník abstrakt Kongres MEFA 2000. Brno: BVV Brno, 2000.
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